IL_5VYC_056

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_056 not in the Motif Atlas

Geometric match to IL_4V88_454

Geometric discrepancy: 0.2615

The information below is about IL_4V88_454

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

5VYC|1|i1|C|1363
5VYC|1|i1|U|1364
5VYC|1|i1|G|1365
*
5VYC|1|i1|C|1374
5VYC|1|i1|G|1375

Current chains

Chain i1

Human 18S ribosomal RNA

Nearby chains

Chain A1

40S ribosomal protein SA

Chain R1

40S ribosomal protein S17