IL_5VYC_059

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_059 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.2299

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

5VYC|1|i1|G|1604
5VYC|1|i1|G|1605
5VYC|1|i1|G|1606
5VYC|1|i1|A|1607
5VYC|1|i1|U|1608
5VYC|1|i1|C|1609
5VYC|1|i1|G|1610
*
5VYC|1|i1|C|1629
5VYC|1|i1|A|1630
5VYC|1|i1|U|1631
5VYC|1|i1|G|1632
5VYC|1|i1|A|1633
5VYC|1|i1|A|1634
5VYC|1|i1|C|1635

Current chains

Chain i1

Human 18S ribosomal RNA

Nearby chains

Chain P1

40S ribosomal protein S15

Chain S1

40S ribosomal protein S18

Chain T1

40S ribosomal protein S19