IL_5VYC_073
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- CAAA*UGACG
- Length
- 9 nucleotides
- Bulged bases
- 5VYC|1|i2|A|516
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_073 not in the Motif Atlas
- Geometric match to IL_4WF9_016
- Geometric discrepancy: 0.2965
- The information below is about IL_4WF9_016
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
5VYC|1|i2|C|37
5VYC|1|i2|A|38
5VYC|1|i2|A|39
5VYC|1|i2|A|40
*
5VYC|1|i2|U|514
5VYC|1|i2|G|515
5VYC|1|i2|A|516
5VYC|1|i2|C|517
5VYC|1|i2|G|518
Current chains
- Chain i2
- Human 18S ribosomal RNA
Nearby chains
- Chain E2
- 40S ribosomal protein S4, X isoform
- Chain J2
- 40S ribosomal protein S9
- Chain Y2
- 40S ribosomal protein S24
Coloring options: