IL_5VYC_078

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

GUU*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_078 not in the Motif Atlas

Geometric match to IL_4TS2_004

Geometric discrepancy: 0.1852

The information below is about IL_4TS2_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

5VYC|1|i2|G|108
5VYC|1|i2|U|109
5VYC|1|i2|U|110
*
5VYC|1|i2|G|351
5VYC|1|i2|U|352
5VYC|1|i2|C|353

Current chains

Chain i2

Human 18S ribosomal RNA

Nearby chains

Chain E2

40S ribosomal protein S4, X isoform

Chain I2

40S ribosomal protein S8

Chain L2

40S ribosomal protein S11