IL_5VYC_093

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

GGUGCCAG*CGGUAAUUCC

Length

18 nucleotides

Bulged bases

5VYC|1|i2|A|628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VYC|1|i2|G|610
5VYC|1|i2|G|611
5VYC|1|i2|U|612
5VYC|1|i2|G|613
5VYC|1|i2|C|614
5VYC|1|i2|C|615
5VYC|1|i2|A|616
5VYC|1|i2|G|617
*
5VYC|1|i2|C|624
5VYC|1|i2|G|625
5VYC|1|i2|G|626
5VYC|1|i2|U|627
5VYC|1|i2|A|628
5VYC|1|i2|A|629
5VYC|1|i2|U|630
5VYC|1|i2|U|631
5VYC|1|i2|C|632
5VYC|1|i2|C|633

Current chains

Chain i2

Human 18S ribosomal RNA

Nearby chains

Chain D2

40S ribosomal protein S3

Chain X2

40S ribosomal protein S23

Chain e2

40S ribosomal protein S30