IL_5VYC_113

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

5VYC|1|i2|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_113 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2671

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

5VYC|1|i2|G|1203
5VYC|1|i2|A|1204
5VYC|1|i2|C|1205
*
5VYC|1|i2|G|1693
5VYC|1|i2|U|1694
5VYC|1|i2|A|1695
5VYC|1|i2|C|1696

Current chains

Chain i2

Human 18S ribosomal RNA

Nearby chains

Chain C2

40S ribosomal protein S2

Chain a2

40S ribosomal protein S26