IL_5VYC_121
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 5VYC|1|i2|C|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_121 not in the Motif Atlas
- Homologous match to IL_4V88_450
- Geometric discrepancy: 0.25
- The information below is about IL_4V88_450
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.2
- Basepair signature
- cWW-L-cWS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5VYC|1|i2|U|1329
5VYC|1|i2|G|1330
5VYC|1|i2|C|1331
5VYC|1|i2|A|1332
5VYC|1|i2|U|1333
*
5VYC|1|i2|A|1498
5VYC|1|i2|U|1499
5VYC|1|i2|G|1500
Current chains
- Chain i2
- Human 18S ribosomal RNA
Nearby chains
- Chain D2
- 40S ribosomal protein S3
- Chain K2
- 40S ribosomal protein S10
- Chain U2
- 40S ribosomal protein S20
- Chain d2
- 40S ribosomal protein S29
- Chain f2
- Ribosomal protein S27a
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