IL_5VYC_126
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- GACU*AUUC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_126 not in the Motif Atlas
- Geometric match to IL_4K27_001
- Geometric discrepancy: 0.2702
- The information below is about IL_4K27_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
5VYC|1|i2|G|1536
5VYC|1|i2|A|1537
5VYC|1|i2|C|1538
5VYC|1|i2|U|1539
*
5VYC|1|i2|A|1594
5VYC|1|i2|U|1595
5VYC|1|i2|U|1596
5VYC|1|i2|C|1597
Current chains
- Chain i2
- Human 18S ribosomal RNA
Nearby chains
- Chain F2
- 40S ribosomal protein S5
- Chain Q2
- 40S ribosomal protein S16
- Chain S2
- 40S ribosomal protein S18
- Chain T2
- 40S ribosomal protein S19
- Chain Z2
- 40S ribosomal protein S25
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