IL_5VYC_150
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- UCCUUU*AUUCG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_150 not in the Motif Atlas
- Homologous match to IL_4V88_393
- Geometric discrepancy: 0.196
- The information below is about IL_4V88_393
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37842.2
- Basepair signature
- cWW-cWW-L-R-cWW-cWW-R-L
- Number of instances in this motif group
- 4
Unit IDs
5VYC|1|i3|U|116
5VYC|1|i3|C|117
5VYC|1|i3|C|118
5VYC|1|i3|U|119
5VYC|1|i3|U|120
5VYC|1|i3|U|121
*
5VYC|1|i3|A|343
5VYC|1|i3|U|344
5VYC|1|i3|U|345
5VYC|1|i3|C|346
5VYC|1|i3|G|347
Current chains
- Chain i3
- Human 18S ribosomal RNA
Nearby chains
- Chain E3
- 40S ribosomal protein S4, X isoform
- Chain I3
- 40S ribosomal protein S8
Coloring options: