IL_5VYC_169
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- AG*CAUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_169 not in the Motif Atlas
- Geometric match to IL_4V88_428
- Geometric discrepancy: 0.1192
- The information below is about IL_4V88_428
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_50694.4
- Basepair signature
- cWW-cWW-tSH-cWW-R
- Number of instances in this motif group
- 28
Unit IDs
5VYC|1|i3|A|922
5VYC|1|i3|G|923
*
5VYC|1|i3|C|1019
5VYC|1|i3|A|1020
5VYC|1|i3|U|1021
5VYC|1|i3|U|1022
Current chains
- Chain i3
- Human 18S ribosomal RNA
Nearby chains
- Chain L3
- 40S ribosomal protein S11
- Chain N3
- 40S ribosomal protein S13
- Chain W3
- 40S ribosomal protein S15a
- Chain b3
- 40S ribosomal protein S27
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