IL_5VYC_187

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_187 not in the Motif Atlas

Homologous match to IL_4V88_446

Geometric discrepancy: 0.3842

The information below is about IL_4V88_446

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5VYC|1|i3|G|1270
5VYC|1|i3|C|1271
5VYC|1|i3|C|1272
*
5VYC|1|i3|G|1510
5VYC|1|i3|U|1511
5VYC|1|i3|C|1512

Current chains

Chain i3

Human 18S ribosomal RNA

Nearby chains

Chain K3

40S ribosomal protein S10

Chain d3

40S ribosomal protein S29

Chain f3

Ribosomal protein S27a