IL_5VYC_222

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

CAGUG*CUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VYC|1|i4|C|223
5VYC|1|i4|A|224
5VYC|1|i4|G|225
5VYC|1|i4|U|287
5VYC|1|i4|G|288
*
5VYC|1|i4|C|295
5VYC|1|i4|U|296
5VYC|1|i4|A|297
5VYC|1|i4|G|298

Current chains

Chain i4

Human 18S ribosomal RNA

Nearby chains

Chain E4

40S ribosomal protein S4, X isoform

Chain G4

40S ribosomal protein S6

Chain I4

40S ribosomal protein S8

Chain L4

40S ribosomal protein S11