IL_5VYC_228

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

UC*GGA

Length

5 nucleotides

Bulged bases

5VYC|1|i4|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_228 not in the Motif Atlas

Geometric match to IL_5J7L_019

Geometric discrepancy: 0.2575

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

5VYC|1|i4|U|495
5VYC|1|i4|C|496
*
5VYC|1|i4|G|506
5VYC|1|i4|G|507
5VYC|1|i4|A|508

Current chains

Chain i4

Human 18S ribosomal RNA

Nearby chains

Chain E4

40S ribosomal protein S4, X isoform

Chain J4

40S ribosomal protein S9

Chain Y4

40S ribosomal protein S24