IL_5VYC_241

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

GUAUU*AAGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_241 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.1893

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

5VYC|1|i4|G|942
5VYC|1|i4|U|943
5VYC|1|i4|A|944
5VYC|1|i4|U|945
5VYC|1|i4|U|946
*
5VYC|1|i4|A|980
5VYC|1|i4|A|981
5VYC|1|i4|G|982
5VYC|1|i4|A|983
5VYC|1|i4|C|984

Current chains

Chain i4

Human 18S ribosomal RNA

Nearby chains

Chain B4

40S ribosomal protein S3a

Chain O4

40S ribosomal protein S14