IL_5VYC_243
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- AGGUUC*GUU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_243 not in the Motif Atlas
- Geometric match to IL_4V88_435
- Geometric discrepancy: 0.1742
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5VYC|1|i4|A|1042
5VYC|1|i4|G|1043
5VYC|1|i4|G|1044
5VYC|1|i4|U|1045
5VYC|1|i4|U|1046
5VYC|1|i4|C|1047
*
5VYC|1|i4|G|1071
5VYC|1|i4|U|1072
5VYC|1|i4|U|1073
Current chains
- Chain i4
- Human 18S ribosomal RNA
Nearby chains
- Chain O4
- 40S ribosomal protein S14
- Chain a4
- 40S ribosomal protein S26
- Chain k4
- Malignant T-cell-amplified sequence 1
Coloring options: