IL_5VYC_247
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- UGC*GGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_247 not in the Motif Atlas
- Geometric match to IL_1YZ9_002
- Geometric discrepancy: 0.27
- The information below is about IL_1YZ9_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
5VYC|1|i4|U|1101
5VYC|1|i4|G|1102
5VYC|1|i4|C|1103
*
5VYC|1|i4|G|1129
5VYC|1|i4|G|1130
5VYC|1|i4|G|1131
Current chains
- Chain i4
- Human 18S ribosomal RNA
Nearby chains
- Chain B4
- 40S ribosomal protein S3a
- Chain N4
- 40S ribosomal protein S13
- Chain R4
- 40S ribosomal protein S17
- Chain W4
- 40S ribosomal protein S15a
- Chain a4
- 40S ribosomal protein S26
- Chain b4
- 40S ribosomal protein S27
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