IL_5VYC_256

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

CCGGACACGGACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUG*UUAGAUG

Length

60 nucleotides

Bulged bases

5VYC|1|i4|G|1274, 5VYC|1|i4|G|1285, 5VYC|1|i4|U|1300, 5VYC|1|i4|G|1507, 5VYC|1|i4|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VYC|1|i4|C|1272
5VYC|1|i4|C|1273
5VYC|1|i4|G|1274
5VYC|1|i4|G|1275
5VYC|1|i4|A|1276
5VYC|1|i4|C|1277
5VYC|1|i4|A|1278
5VYC|1|i4|C|1279
5VYC|1|i4|G|1280
5VYC|1|i4|G|1281
5VYC|1|i4|A|1282
5VYC|1|i4|C|1283
5VYC|1|i4|A|1284
5VYC|1|i4|G|1285
5VYC|1|i4|G|1286
5VYC|1|i4|A|1287
5VYC|1|i4|U|1288
5VYC|1|i4|U|1289
5VYC|1|i4|G|1290
5VYC|1|i4|A|1291
5VYC|1|i4|C|1292
5VYC|1|i4|A|1293
5VYC|1|i4|G|1294
5VYC|1|i4|A|1295
5VYC|1|i4|U|1296
5VYC|1|i4|U|1297
5VYC|1|i4|G|1298
5VYC|1|i4|A|1299
5VYC|1|i4|U|1300
5VYC|1|i4|A|1301
5VYC|1|i4|G|1302
5VYC|1|i4|C|1303
5VYC|1|i4|U|1304
5VYC|1|i4|C|1305
5VYC|1|i4|U|1306
5VYC|1|i4|U|1307
5VYC|1|i4|U|1308
5VYC|1|i4|C|1309
5VYC|1|i4|U|1310
5VYC|1|i4|C|1311
5VYC|1|i4|G|1312
5VYC|1|i4|A|1313
5VYC|1|i4|U|1314
5VYC|1|i4|U|1315
5VYC|1|i4|C|1316
5VYC|1|i4|C|1317
5VYC|1|i4|G|1318
5VYC|1|i4|U|1319
5VYC|1|i4|G|1320
5VYC|1|i4|G|1321
5VYC|1|i4|G|1322
5VYC|1|i4|U|1323
5VYC|1|i4|G|1324
*
5VYC|1|i4|U|1504
5VYC|1|i4|U|1505
5VYC|1|i4|A|1506
5VYC|1|i4|G|1507
5VYC|1|i4|A|1508
5VYC|1|i4|U|1509
5VYC|1|i4|G|1510

Current chains

Chain i4

Human 18S ribosomal RNA

Nearby chains

Chain K4

40S ribosomal protein S10

Chain M4

40S ribosomal protein S12

Chain P4

40S ribosomal protein S15

Chain d4

40S ribosomal protein S29

Chain f4

Ribosomal protein S27a