IL_5VYC_260
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- CCG*CAGG
- Length
- 7 nucleotides
- Bulged bases
- 5VYC|1|i4|A|1489
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_260 not in the Motif Atlas
- Geometric match to IL_5TBW_008
- Geometric discrepancy: 0.2661
- The information below is about IL_5TBW_008
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
5VYC|1|i4|C|1336
5VYC|1|i4|C|1337
5VYC|1|i4|G|1338
*
5VYC|1|i4|C|1488
5VYC|1|i4|A|1489
5VYC|1|i4|G|1490
5VYC|1|i4|G|1491
Current chains
- Chain i4
- Human 18S ribosomal RNA
Nearby chains
- Chain C4
- 40S ribosomal protein S2
- Chain D4
- 40S ribosomal protein S3
- Chain Q4
- 40S ribosomal protein S16
- Chain U4
- 40S ribosomal protein S20
- Chain d4
- 40S ribosomal protein S29
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