IL_5VYC_278

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

UCU*AAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_278 not in the Motif Atlas

Homologous match to IL_4V88_385

Geometric discrepancy: 0.2072

The information below is about IL_4V88_385

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5VYC|1|i5|U|34
5VYC|1|i5|C|35
5VYC|1|i5|U|36
*
5VYC|1|i5|A|519
5VYC|1|i5|A|520
5VYC|1|i5|A|521

Current chains

Chain i5

Human 18S ribosomal RNA

Nearby chains

Chain J5

40S ribosomal protein S9