IL_5VYC_298

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

5VYC|1|i5|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VYC|1|i5|A|599
5VYC|1|i5|G|600
5VYC|1|i5|G|601
5VYC|1|i5|G|602
5VYC|1|i5|C|603
5VYC|1|i5|A|604
5VYC|1|i5|A|605
5VYC|1|i5|G|606
5VYC|1|i5|U|607
5VYC|1|i5|C|608
*
5VYC|1|i5|G|635
5VYC|1|i5|C|636
5VYC|1|i5|U|637

Current chains

Chain i5

Human 18S ribosomal RNA

Nearby chains

Chain C5

40S ribosomal protein S2

Chain D5

40S ribosomal protein S3

Chain J5

40S ribosomal protein S9

Chain e5

40S ribosomal protein S30