IL_5VYC_362
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- 5VYC|1|i6|U|368, 5VYC|1|i6|C|369
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_362 not in the Motif Atlas
- Geometric match to IL_5Y58_001
- Geometric discrepancy: 0.3311
- The information below is about IL_5Y58_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37738.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5VYC|1|i6|U|366
5VYC|1|i6|U|367
5VYC|1|i6|U|368
5VYC|1|i6|C|369
5VYC|1|i6|G|370
5VYC|1|i6|A|371
*
5VYC|1|i6|U|393
5VYC|1|i6|G|394
Current chains
- Chain i6
- Human 18S ribosomal RNA
Nearby chains
- Chain I6
- 40S ribosomal protein S8
- Chain L6
- 40S ribosomal protein S11
- Chain k3
- Malignant T-cell-amplified sequence 1
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