IL_5VYC_367

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

CAAUA*UAAUUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VYC|1|i6|C|527
5VYC|1|i6|A|528
5VYC|1|i6|A|529
5VYC|1|i6|U|530
5VYC|1|i6|A|531
*
5VYC|1|i6|U|553
5VYC|1|i6|A|554
5VYC|1|i6|A|555
5VYC|1|i6|U|556
5VYC|1|i6|U|557
5VYC|1|i6|G|558

Current chains

Chain i6

Human 18S ribosomal RNA

Nearby chains

Chain J6

40S ribosomal protein S9

Chain e6

40S ribosomal protein S30