IL_5VYC_396

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

5VYC|1|i6|U|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VYC_396 not in the Motif Atlas

Homologous match to IL_4V88_449

Geometric discrepancy: 0.3351

The information below is about IL_4V88_449

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5VYC|1|i6|G|1325
5VYC|1|i6|U|1326
5VYC|1|i6|G|1327
*
5VYC|1|i6|C|1502
5VYC|1|i6|C|1503

Current chains

Chain i6

Human 18S ribosomal RNA

Nearby chains

Chain K6

40S ribosomal protein S10

Chain d6

40S ribosomal protein S29

Chain f6

Ribosomal protein S27a