IL_5VYC_465

3D structure

PDB id

5VYC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.

Experimental method

X-RAY DIFFRACTION

Resolution

6 Å

Loop

Sequence

CCGCCC*GUAACAAG

Length

14 nucleotides

Bulged bases

5VYC|1|i4|C|1701, 5VYC|1|i4|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VYC|1|i4|C|1700
5VYC|1|i4|C|1701
5VYC|1|i4|G|1702
5VYC|1|i4|C|1703
5VYC|1|i4|C|1704
5VYC|1|i4|C|1705
*
5VYC|1|i4|G|1829
5VYC|1|i4|U|1830
5VYC|1|i4|A|1831
5VYC|1|i4|A|1832
5VYC|1|i4|C|1833
5VYC|1|i4|A|1834
5VYC|1|i4|A|1835
5VYC|1|i4|G|1836

Current chains

Chain i4

Human 18S ribosomal RNA

Nearby chains

Chain a4

40S ribosomal protein S26

Chain j4

60S ribosomal protein L41

Chain l4

Density-regulated protein