IL_5VYC_469
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- UACGCA*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 5VYC|1|i5|C|65, 5VYC|1|i5|C|67
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VYC_469 not in the Motif Atlas
- Homologous match to IL_8P9A_379
- Geometric discrepancy: 0.2132
- The information below is about IL_8P9A_379
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_21667.2
- Basepair signature
- cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
5VYC|1|i5|U|63
5VYC|1|i5|A|64
5VYC|1|i5|C|65
5VYC|1|i5|G|66
5VYC|1|i5|C|67
5VYC|1|i5|A|68
*
5VYC|1|i5|U|81
5VYC|1|i5|G|82
5VYC|1|i5|A|83
5VYC|1|i5|A|84
5VYC|1|i5|A|85
Current chains
- Chain i5
- Human 18S ribosomal RNA
Nearby chains
- Chain G5
- 40S ribosomal protein S6
- Chain Y5
- 40S ribosomal protein S24
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