IL_5VYC_525
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- GCUCAGCGUGUGCCUACC*GUAACCCGUUGAACCC
- Length
- 34 nucleotides
- Bulged bases
- 5VYC|1|i6|U|1543, 5VYC|1|i6|C|1544, 5VYC|1|i6|G|1552, 5VYC|1|i6|C|1553, 5VYC|1|i6|C|1554, 5VYC|1|i6|U|1555, 5VYC|1|i6|A|1580, 5VYC|1|i6|C|1581, 5VYC|1|i6|U|1585, 5VYC|1|i6|G|1587
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5VYC|1|i6|G|1541
5VYC|1|i6|C|1542
5VYC|1|i6|U|1543
5VYC|1|i6|C|1544
5VYC|1|i6|A|1545
5VYC|1|i6|G|1546
5VYC|1|i6|C|1547
5VYC|1|i6|G|1548
5VYC|1|i6|U|1549
5VYC|1|i6|G|1550
5VYC|1|i6|U|1551
5VYC|1|i6|G|1552
5VYC|1|i6|C|1553
5VYC|1|i6|C|1554
5VYC|1|i6|U|1555
5VYC|1|i6|A|1556
5VYC|1|i6|C|1557
5VYC|1|i6|C|1558
*
5VYC|1|i6|G|1577
5VYC|1|i6|U|1578
5VYC|1|i6|A|1579
5VYC|1|i6|A|1580
5VYC|1|i6|C|1581
5VYC|1|i6|C|1582
5VYC|1|i6|C|1583
5VYC|1|i6|G|1584
5VYC|1|i6|U|1585
5VYC|1|i6|U|1586
5VYC|1|i6|G|1587
5VYC|1|i6|A|1588
5VYC|1|i6|A|1589
5VYC|1|i6|C|1590
5VYC|1|i6|C|1591
5VYC|1|i6|C|1592
Current chains
- Chain i6
- Human 18S ribosomal RNA
Nearby chains
- Chain D6
- 40S ribosomal protein S3
- Chain F6
- 40S ribosomal protein S5
- Chain K6
- 40S ribosomal protein S10
- Chain Q6
- 40S ribosomal protein S16
- Chain T6
- 40S ribosomal protein S19
- Chain U6
- 40S ribosomal protein S20
- Chain Z6
- 40S ribosomal protein S25
- Chain d6
- 40S ribosomal protein S29
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