IL_5VZL_003

3D structure

PDB id

5VZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of the Cas9-sgRNA-AcrIIA4 anti-CRISPR complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

5VZL|1|B|U|77

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VZL_003 not in the Motif Atlas

Geometric match to IL_5FQ5_002

Geometric discrepancy: 0.1231

The information below is about IL_5FQ5_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

5VZL|1|B|G|72
5VZL|1|B|C|73
*
5VZL|1|B|G|76
5VZL|1|B|U|77
5VZL|1|B|C|78

Current chains

Chain B

single guide RNA (116-MER)

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9