IL_5W1I_002

3D structure

PDB id

5W1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of LbaCas13a (C2c2) bound to mature crRNA (20-nt spacer)

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

AG*CAAU

Length

6 nucleotides

Bulged bases

5W1I|1|D|A|-5, 5W1I|1|D|A|-4

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5W1I_002 not in the Motif Atlas

Geometric match to IL_5WLH_001

Geometric discrepancy: 0.0291

The information below is about IL_5WLH_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

5W1I|1|D|A|-22
5W1I|1|D|G|-21
*
5W1I|1|D|C|-6
5W1I|1|D|A|-5
5W1I|1|D|A|-4
5W1I|1|D|U|-3

Current chains

Chain D

mature crRNA

Nearby chains

Chain C

LbaCas13a (C2c2)