3D structure

PDB id
5W4K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CGGAC*GUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5W4K_010 not in the Motif Atlas
Homologous match to IL_8VTW_009
Geometric discrepancy: 0.2268
The information below is about IL_8VTW_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_45612.4
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
14

Unit IDs

5W4K|1|1A|C|297
5W4K|1|1A|G|298
5W4K|1|1A|G|299
5W4K|1|1A|A|302
5W4K|1|1A|C|303
*
5W4K|1|1A|G|385
5W4K|1|1A|U|386
5W4K|1|1A|G|387

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4336 s