IL_5W4K_011
3D structure
- PDB id
- 5W4K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAAU*AUAG
- Length
- 9 nucleotides
- Bulged bases
- 5W4K|1|1A|A|307
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5W4K_011 not in the Motif Atlas
- Homologous match to IL_7RQB_011
- Geometric discrepancy: 0.0763
- The information below is about IL_7RQB_011
- Detailed Annotation
- tSH-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_04059.1
- Basepair signature
- cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
5W4K|1|1A|C|304
5W4K|1|1A|G|305
5W4K|1|1A|A|306
5W4K|1|1A|A|307
5W4K|1|1A|U|308
*
5W4K|1|1A|A|381
5W4K|1|1A|U|382
5W4K|1|1A|A|383
5W4K|1|1A|G|384
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: