3D structure

PDB id
5W4K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GGUAAAG*CGAAAAUGAUCGGGGC
Length
23 nucleotides
Bulged bases
5W4K|1|1A|U|1072, 5W4K|1|1A|A|1173, 5W4K|1|1A|U|1176
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5W4K_039 not in the Motif Atlas
Geometric match to IL_7RQB_040
Geometric discrepancy: 0.0324
The information below is about IL_7RQB_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

5W4K|1|1A|G|1070
5W4K|1|1A|G|1071
5W4K|1|1A|U|1072
5W4K|1|1A|A|1073
5W4K|1|1A|A|1074
5W4K|1|1A|A|1075
5W4K|1|1A|G|1076
*
5W4K|1|1A|C|1170
5W4K|1|1A|G|1171
5W4K|1|1A|A|1172
5W4K|1|1A|A|1173
5W4K|1|1A|A|1174
5W4K|1|1A|A|1175
5W4K|1|1A|U|1176
5W4K|1|1A|G|1177
5W4K|1|1A|A|1178
5W4K|1|1A|U|1179
5W4K|1|1A|C|1180
5W4K|1|1A|G|1181
5W4K|1|1A|G|1182
5W4K|1|1A|G|1183
5W4K|1|1A|G|1184
5W4K|1|1A|C|1185

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 19
50S ribosomal protein L36
Chain 1B
5S ribosomal RNA; 5S rRNA
Chain 1E
50S ribosomal protein L3
Chain 1N
50S ribosomal protein L13
Chain 1Q
50S ribosomal protein L16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1983 s