IL_5W4K_085
3D structure
- PDB id
- 5W4K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAG*CGCCGGUGAAAUAC
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5W4K_085 not in the Motif Atlas
- Homologous match to IL_3U4M_003
- Geometric discrepancy: 0.3373
- The information below is about IL_3U4M_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_75283.2
- Basepair signature
- cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R
- Number of instances in this motif group
- 3
Unit IDs
5W4K|1|1A|G|2146
5W4K|1|1A|G|2147
5W4K|1|1A|A|2148
5W4K|1|1A|G|2149
*
5W4K|1|1A|C|2183
5W4K|1|1A|G|2184
5W4K|1|1A|C|2185
5W4K|1|1A|C|2186
5W4K|1|1A|G|2187
5W4K|1|1A|G|2188
5W4K|1|1A|U|2189
5W4K|1|1A|G|2190
5W4K|1|1A|A|2191
5W4K|1|1A|A|2192
5W4K|1|1A|A|2193
5W4K|1|1A|U|2194
5W4K|1|1A|A|2195
5W4K|1|1A|C|2196
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1y
- Transfer RNA; tRNA
Coloring options: