IL_5W4K_141

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5W4K_141 not in the Motif Atlas

Geometric match to IL_4LFB_027

Geometric discrepancy: 0.0688

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

5W4K|1|1a|G|654
5W4K|1|1a|A|655
*
5W4K|1|1a|U|751
5W4K|1|1a|G|752
5W4K|1|1a|A|753
5W4K|1|1a|C|754

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1h

30S ribosomal protein S8

Chain 1o

30S ribosomal protein S15