IL_5W4K_192

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5W4K|1|2A|G|801, 5W4K|1|2A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5W4K_192 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0338

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5W4K|1|2A|G|674
5W4K|1|2A|A|675
5W4K|1|2A|A|676
5W4K|1|2A|A|677
5W4K|1|2A|C|678
*
5W4K|1|2A|G|799
5W4K|1|2A|A|800
5W4K|1|2A|G|801
5W4K|1|2A|A|802
5W4K|1|2A|U|803
5W4K|1|2A|A|804
5W4K|1|2A|G|805
5W4K|1|2A|C|806

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15