IL_5W4K_236

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

5W4K|1|2A|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5W4K_236 not in the Motif Atlas

Homologous match to IL_7RQB_067

Geometric discrepancy: 0.0578

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

5W4K|1|2A|A|1669
5W4K|1|2A|C|1670
5W4K|1|2A|U|1671
5W4K|1|2A|C|1672
5W4K|1|2A|U|1673
5W4K|1|2A|G|1674
*
5W4K|1|2A|C|1990
5W4K|1|2A|U|1991
5W4K|1|2A|G|1992
5W4K|1|2A|U|1993

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14