IL_5W4K_248

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

5W4K|1|2A|C|2055, 5W4K|1|2A|C|2612, 5W4K|1|2A|U|2613, 5W4K|1|2A|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5W4K_248 not in the Motif Atlas

Homologous match to IL_7RQB_079

Geometric discrepancy: 0.0673

The information below is about IL_7RQB_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5W4K|1|2A|A|2054
5W4K|1|2A|C|2055
5W4K|1|2A|G|2056
5W4K|1|2A|A|2057
*
5W4K|1|2A|U|2611
5W4K|1|2A|C|2612
5W4K|1|2A|U|2613
5W4K|1|2A|A|2614
5W4K|1|2A|U|2615

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2F

50S ribosomal protein L4

Chain 2W

50S ribosomal protein L22

Chain B

Klebsazolicin