IL_5W4K_254

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5W4K_254 not in the Motif Atlas

Geometric match to IL_3U4M_002

Geometric discrepancy: 0.3846

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

5W4K|1|2A|G|2110
5W4K|1|2A|C|2111
5W4K|1|2A|G|2112
5W4K|1|2A|U|2113
5W4K|1|2A|A|2114
5W4K|1|2A|G|2115
5W4K|1|2A|G|2116
5W4K|1|2A|A|2117
5W4K|1|2A|U|2118
5W4K|1|2A|A|2119
5W4K|1|2A|G|2120
*
5W4K|1|2A|C|2178
5W4K|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA