IL_5W4K_256

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

5W4K|1|2A|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5W4K_256 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.4606

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5W4K|1|2A|C|2129
5W4K|1|2A|U|2130
5W4K|1|2A|G|2131
5W4K|1|2A|U|2132
5W4K|1|2A|G|2133
5W4K|1|2A|A|2134
5W4K|1|2A|A|2135
5W4K|1|2A|C|2136
*
5W4K|1|2A|G|2155
5W4K|1|2A|G|2156
5W4K|1|2A|G|2157
5W4K|1|2A|A|2158
5W4K|1|2A|G|2159

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains