3D structure

PDB id
5W4K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GCAC*GUUCCC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5W4K_321 not in the Motif Atlas
Geometric match to IL_6CZR_149
Geometric discrepancy: 0.1687
The information below is about IL_6CZR_149
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_93211.1
Basepair signature
cWW-cWS-cWW-L-R-cWW-L
Number of instances in this motif group
2

Unit IDs

5W4K|1|2a|G|933
5W4K|1|2a|C|934
5W4K|1|2a|A|935
5W4K|1|2a|C|936
*
5W4K|1|2a|G|1379
5W4K|1|2a|U|1380
5W4K|1|2a|U|1381
5W4K|1|2a|C|1382
5W4K|1|2a|C|1383
5W4K|1|2a|C|1384

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2g
30S ribosomal protein S7
Chain 2i
30S ribosomal protein S9
Chain 2x
Transfer RNA; tRNA
Chain 2y
Transfer RNA; tRNA

Coloring options:


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