IL_5WDT_036
3D structure
- PDB id
- 5WDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome-EF-Tu H84A complex with GppNHp
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGAAGG*UCGGCC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5WDT_036 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.3557
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
5WDT|1|A|G|1037
5WDT|1|A|G|1038
5WDT|1|A|A|1039
5WDT|1|A|A|1040
5WDT|1|A|G|1041
5WDT|1|A|G|1042
*
5WDT|1|A|U|1113
5WDT|1|A|C|1114
5WDT|1|A|G|1115
5WDT|1|A|G|1116
5WDT|1|A|C|1117
5WDT|1|A|C|1118
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain 5
- 50S ribosomal protein L10
- Chain G
- 50S ribosomal protein L6
- Chain M
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L25
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