3D structure

PDB id
5WDT (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu H84A complex with GppNHp
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GGAAGG*UCGGCC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5WDT_036 not in the Motif Atlas
Geometric match to IL_5TBW_476
Geometric discrepancy: 0.3557
The information below is about IL_5TBW_476
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31007.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
5

Unit IDs

5WDT|1|A|G|1037
5WDT|1|A|G|1038
5WDT|1|A|A|1039
5WDT|1|A|A|1040
5WDT|1|A|G|1041
5WDT|1|A|G|1042
*
5WDT|1|A|U|1113
5WDT|1|A|C|1114
5WDT|1|A|G|1115
5WDT|1|A|G|1116
5WDT|1|A|C|1117
5WDT|1|A|C|1118

Current chains

Chain A
23S rRNA

Nearby chains

Chain 4
50S ribosomal protein L36
Chain 5
50S ribosomal protein L10
Chain G
50S ribosomal protein L6
Chain M
50S ribosomal protein L16
Chain V
50S ribosomal protein L25

Coloring options:


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