IL_5WDT_109
3D structure
- PDB id
- 5WDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome-EF-Tu H84A complex with GppNHp
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- ACCCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5WDT_109 not in the Motif Atlas
- Homologous match to IL_7RQB_114
- Geometric discrepancy: 0.2349
- The information below is about IL_7RQB_114
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.6
- Basepair signature
- cWW-cWS-L-tSW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
5WDT|1|B|A|34
5WDT|1|B|C|35
5WDT|1|B|C|36
5WDT|1|B|C|37
5WDT|1|B|C|38
*
5WDT|1|B|G|44
5WDT|1|B|A|45
5WDT|1|B|A|46
5WDT|1|B|C|47
5WDT|1|B|U|48
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain 6
- 50S ribosomal protein L31
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S ribosomal protein L5
- Chain O
- 50S ribosomal protein L18
Coloring options: