IL_5WDT_179

3D structure

PDB id

5WDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WDT_179 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0639

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5WDT|1|A|G|1666
5WDT|1|A|G|1667
5WDT|1|A|A|1668
5WDT|1|A|A|1669
5WDT|1|A|C|1670
5WDT|1|A|U|1671
5WDT|1|A|A|1672
5WDT|1|A|G|1673
5WDT|1|A|G|1674
*
5WDT|1|A|C|1990
5WDT|1|A|U|1991
5WDT|1|A|G|1992
5WDT|1|A|U|1993
5WDT|1|A|C|1994

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14