IL_5WDT_180

3D structure

PDB id

5WDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WDT_180 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1472

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5WDT|1|A|U|1851
5WDT|1|A|U|1852
5WDT|1|A|A|1853
5WDT|1|A|A|1854
5WDT|1|A|U|1855
5WDT|1|A|U|1856
5WDT|1|A|G|1857
5WDT|1|A|A|1858
5WDT|1|A|U|1859
5WDT|1|A|G|1860
*
5WDT|1|A|U|1882
5WDT|1|A|U|1883
5WDT|1|A|G|1884
5WDT|1|A|A|1885
5WDT|1|A|U|1886
5WDT|1|A|C|1887
5WDT|1|A|G|1888
5WDT|1|A|A|1889
5WDT|1|A|A|1890
5WDT|1|A|G|1891

Current chains

Chain A

23S rRNA

Nearby chains

Chain w

Transfer RNA; tRNA