IL_5WDT_186

3D structure

PDB id

5WDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

(PSU)GA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WDT_186 not in the Motif Atlas

Homologous match to IL_5J7L_393

Geometric discrepancy: 0.1164

The information below is about IL_5J7L_393

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_07039.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

5WDT|1|A|PSU|2457
5WDT|1|A|G|2458
5WDT|1|A|A|2459
*
5WDT|1|A|U|2493
5WDT|1|A|G|2494

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16