IL_5WE4_050

3D structure

PDB id

5WE4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu wt complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

5WE4|1|A|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WE4_050 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.1571

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

5WE4|1|A|G|1432
5WE4|1|A|A|1433
5WE4|1|A|A|1434
5WE4|1|A|G|1435
*
5WE4|1|A|C|1557
5WE4|1|A|C|1558
5WE4|1|A|U|1559
5WE4|1|A|G|1560
5WE4|1|A|C|1561

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2