3D structure

PDB id
5WE4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu wt complex with GppNHp
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAUUAG*CGACGAUC
Length
14 nucleotides
Bulged bases
5WE4|1|a|U|244, 5WE4|1|a|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5WE4_125 not in the Motif Atlas
Homologous match to IL_5J7L_014
Geometric discrepancy: 0.1163
The information below is about IL_5J7L_014
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

5WE4|1|a|G|242
5WE4|1|a|A|243
5WE4|1|a|U|244
5WE4|1|a|U|245
5WE4|1|a|A|246
5WE4|1|a|G|247
*
5WE4|1|a|C|277
5WE4|1|a|G|278
5WE4|1|a|A|279
5WE4|1|a|C|280
5WE4|1|a|G|281
5WE4|1|a|A|282
5WE4|1|a|U|283
5WE4|1|a|C|284

Current chains

Chain a
16S rRNA

Nearby chains

Chain l
30S ribosomal protein S12
Chain q
30S ribosomal protein S17

Coloring options:


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