IL_5WE4_177

3D structure

PDB id

5WE4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu wt complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG*CGU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WE4_177 not in the Motif Atlas

Homologous match to IL_5WT1_001

Geometric discrepancy: 0.279

The information below is about IL_5WT1_001

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

5WE4|1|y|A|26
5WE4|1|y|G|27
*
5WE4|1|y|C|43
5WE4|1|y|G|44
5WE4|1|y|U|45

Current chains

Chain y

Phe-tRNA-Phe

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain l

30S ribosomal protein S12