IL_5WE4_183

3D structure

PDB id

5WE4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu wt complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WE4_183 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0546

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5WE4|1|A|G|1666
5WE4|1|A|G|1667
5WE4|1|A|A|1668
5WE4|1|A|A|1669
5WE4|1|A|C|1670
5WE4|1|A|U|1671
5WE4|1|A|A|1672
5WE4|1|A|G|1673
5WE4|1|A|G|1674
*
5WE4|1|A|C|1990
5WE4|1|A|U|1991
5WE4|1|A|G|1992
5WE4|1|A|U|1993
5WE4|1|A|C|1994

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14