IL_5WE4_193

3D structure

PDB id

5WE4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu wt complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5WE4|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WE4_193 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1179

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5WE4|1|a|G|147
5WE4|1|a|G|148
5WE4|1|a|A|149
5WE4|1|a|U|150
5WE4|1|a|A|151
5WE4|1|a|A|152
5WE4|1|a|C|153
*
5WE4|1|a|G|168
5WE4|1|a|C|169
5WE4|1|a|U|170
5WE4|1|a|A|171
5WE4|1|a|A|172
5WE4|1|a|U|173
5WE4|1|a|A|174
5WE4|1|a|C|175

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20