IL_5WE6_080

3D structure

PDB id

5WE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

5WE6|1|A|A|2171, 5WE6|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WE6_080 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.4615

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

5WE6|1|A|G|2124
5WE6|1|A|G|2125
5WE6|1|A|A|2126
5WE6|1|A|G|2127
5WE6|1|A|G|2128
*
5WE6|1|A|C|2160
5WE6|1|A|C|2161
5WE6|1|A|G|2162
5WE6|1|A|A|2163
5WE6|1|A|C|2164
5WE6|1|A|C|2165
5WE6|1|A|U|2166
5WE6|1|A|U|2167
5WE6|1|A|G|2168
5WE6|1|A|A|2169
5WE6|1|A|A|2170
5WE6|1|A|A|2171
5WE6|1|A|U|2172
5WE6|1|A|A|2173
5WE6|1|A|C|2174

Current chains

Chain A

23S rRNA

Nearby chains

Chain w

Transfer RNA; tRNA